We report helium isotope data collected in the central Indian Ocean, from the Arabian Sea to the Southern Ocean, during a Japanese GEOTRACES cruise in 2009 - 2010. We found hydrothermal helium-3 plumes and confirmed that ³He/⁴He ratio anomalies were almost the same as those observed in WOCE cruises conducted in 1990s, which indicates the hydrothermal activity and abyssal currents have not changed largely for the last few decades. Maximum δ³He value over 14% was observed at mid-depth (2000 - 3000 m) in the northern part (north of 30°S) in the central Indian Ocean, whereas lower δ³He was found in the southern part at the same depth, where δ³He is defined as the percent deviation of the helium isotopic ratio relative to the atmospheric standard. The vertical distribution of δ³He shows a similar trend with dissolved iron and manganese distributions in the hydrothermal plume. Lateral δ³He distribution at mid-depth using our GEOTRACES data together with WOCE data suggest that the helium-3 plume in the central Indian Ocean derived from the Central Indian Ridge around 20°S. It does not flow northward along the ridge but flows eastward as previously reported. The source of the helium-3 plume observed in the region adjacent to the Indian subcontinent might be in the Gulf of Aden as inferred from water properties. The δ³He distribution could reveal clockwise deep-water circulation in the Arabian Sea.